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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Pathol. Oncol. Res.</journal-id>
<journal-title>Pathology &#x26; Oncology Research</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Pathol. Oncol. Res.</abbrev-journal-title>
<issn pub-type="epub">1532-2807</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="publisher-id">1609778</article-id>
<article-id pub-id-type="doi">10.3389/pore.2021.1609778</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Society Journal Archive</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>The Impact of IDH1 Mutation and MGMT Promoter Methylation on Recurrence-Free Interval in Glioblastoma Patients Treated With Radiotherapy and Chemotherapeutic Agents</article-title>
<alt-title alt-title-type="left-running-head">Kurdi et&#x20;al.</alt-title>
<alt-title alt-title-type="right-running-head">IDH1 and MGMT in Glioblastoma</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Kurdi</surname>
<given-names>Maher</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Shafique Butt</surname>
<given-names>Nadeem</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Baeesa</surname>
<given-names>Saleh</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Alghamdi</surname>
<given-names>Badrah</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Maghrabi</surname>
<given-names>Yazid</given-names>
</name>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Bardeesi</surname>
<given-names>Anas</given-names>
</name>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Saeedi</surname>
<given-names>Rothaina</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Al-Sinani</surname>
<given-names>Taghreed</given-names>
</name>
<xref ref-type="aff" rid="aff6">
<sup>6</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Alghanmi</surname>
<given-names>Najla</given-names>
</name>
<xref ref-type="aff" rid="aff7">
<sup>7</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Bari</surname>
<given-names>Mohammed O.</given-names>
</name>
<xref ref-type="aff" rid="aff7">
<sup>7</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Samkari</surname>
<given-names>Alaa</given-names>
</name>
<xref ref-type="aff" rid="aff8">
<sup>8</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Lary</surname>
<given-names>Ahmed I.</given-names>
</name>
<xref ref-type="aff" rid="aff9">
<sup>9</sup>
</xref>
</contrib>
</contrib-group>
<aff id="aff1">
<label>
<sup>1</sup>
</label>Department of Pathology, Faculty of Medicine in Rabigh, King Abdulaziz University, <addr-line>Jeddah</addr-line>, <country>Saudi Arabia</country>
</aff>
<aff id="aff2">
<label>
<sup>2</sup>
</label>Department of Family and Community Medicine, Faculty of Medicine in Rabigh, King Abdulaziz University, <addr-line>Jeddah</addr-line>, <country>Saudi Arabia</country>
</aff>
<aff id="aff3">
<label>
<sup>3</sup>
</label>Division of Neurosurgery, Faculty of Medicine, King Abdulaziz University, <addr-line>Jeddah</addr-line>, <country>Saudi Arabia</country>
</aff>
<aff id="aff4">
<label>
<sup>4</sup>
</label>Department of Physiology, Faculty of Medicine, King Abdulaziz University, <addr-line>Jeddah</addr-line>, <country>Saudi Arabia</country>
</aff>
<aff id="aff5">
<label>
<sup>5</sup>
</label>Department of Neuroscience, King Faisal Specialist Hospital, <addr-line>Jeddah</addr-line>, <country>Saudi Arabia</country>
</aff>
<aff id="aff6">
<label>
<sup>6</sup>
</label>Department of Surgery,Division of Neurosurgery, King Fahad General Hospital, <addr-line>Jeddah</addr-line>, <country>Saudi Arabia</country>
</aff>
<aff id="aff7">
<label>
<sup>7</sup>
</label>Department of Pathology, King Abdulaziz University Hospital, <addr-line>Jeddah</addr-line>, <country>Saudi Arabia</country>
</aff>
<aff id="aff8">
<label>
<sup>8</sup>
</label>Department of Pathology and Laboratory Medicine, King Saud Bin Abdulaziz University for Health Science, <addr-line>Jeddah</addr-line>, <country>Saudi Arabia</country>
</aff>
<aff id="aff9">
<label>
<sup>9</sup>
</label>Section of Neurosurgery, Department of Surgery, King Abdulaziz Medical City, <addr-line>Jeddah</addr-line>, <country>Saudi Arabia</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>
<bold>Edited by:</bold> Anna Sebesty&#xe9;n, Semmelweis University, Hungary</p>
</fn>
<corresp id="c001">&#x2a;Correspondence: Maher Kurdi, <email>Ahkurdi@kau.edu.sa</email>
</corresp>
</author-notes>
<pub-date pub-type="epub">
<day>29</day>
<month>04</month>
<year>2021</year>
</pub-date>
<pub-date pub-type="collection">
<year>2021</year>
</pub-date>
<volume>27</volume>
<elocation-id>1609778</elocation-id>
<history>
<date date-type="received">
<day>12</day>
<month>02</month>
<year>2021</year>
</date>
<date date-type="accepted">
<day>07</day>
<month>04</month>
<year>2021</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2021 Kurdi, Shafique Butt, Baeesa, Alghamdi, Maghrabi, Bardeesi, Saeedi, Al-Sinani, Alghanmi, Bari, Samkari and Lary.</copyright-statement>
<copyright-year>2021</copyright-year>
<copyright-holder>Kurdi, Shafique Butt, Baeesa, Alghamdi, Maghrabi, Bardeesi, Saeedi, Al-Sinani, Alghanmi, Bari, Samkari and Lary</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these&#x20;terms.</p>
</license>
</permissions>
<abstract>
<p>The aim of this study is to investigate the relationship between isocitrate dehydrogenase-1 (<italic>IDH1</italic>) mutation and O<sup>6</sup>-methylguanine-DNA methyltransferase (<italic>MGMT</italic>) promoter methylation with recurrence-free interval in glioblastoma patients treated with chemoradiotherapies. Clinical data were collected from 82 patients with totally resected glioblastoma and treated with adjuvant therapies from 2014 to 2019. <italic>IDH1</italic> mutation was assessed by immunohistochemistry and <italic>MGMT</italic> promoter methylation was assessed by different sequencing methods. <italic>IDH1</italic> mutation was present in 32 cases and 50 cases were <italic>IDH1</italic> wildtype; 54 and 28 patients had unmethylated and methylated <italic>MGMT</italic> promoter, respectively, Of the 82 patients, 62 patients received chemoradiotherapy while 20 patients only received radiation. Approximately, 61% of patients had a tumor recurrence after 1&#xa0;year, and 39% showed a recurrence before 1&#xa0;year of treatment. There was no significant relationship between <italic>IDH1</italic> mutation and <italic>MGMT</italic> promoter methylation (<italic>p</italic>-value &#x3d; 0.972). Patients with <italic>IDH1</italic> mutation and their age &#x3c;50&#x20;years showed a significant difference in recurrence-free interval (<italic>p</italic>-value &#x3d; 0.014). Difference in recurrence-free interval was also statistically observed in patients with unmethylated <italic>MGMT</italic> promoter and treated with chemoradiotherapies (<italic>p</italic>-value &#x3d; 0.031), by which they showed a late tumor recurrence (<italic>p</italic>-value &#x3d; 0.016). This revealed that <italic>IDH1</italic> mutation and <italic>MGMT</italic> methylation are independent prognostic factors in glioblastoma. Although <italic>IDH1</italic>-mutant glioblastomas showed late tumor recurrence in patients less than 50&#xa0;years old, the type of treatment modalities may not show additional beneficial outcome. Patients with unmethylated <italic>MGMT</italic> and <italic>IDH1</italic> mutation, treated with different chemoradiotherapies, showed a late tumor recurrence.</p>
</abstract>
<kwd-group>
<kwd>glioblastoma</kwd>
<kwd>chemotherapy</kwd>
<kwd>IDH1 mutation</kwd>
<kwd>MGMT promoter methylation</kwd>
<kwd>radiotherapy</kwd>
</kwd-group>
</article-meta>
</front>
<body>
<sec id="s1">
<title>Introduction</title>
<p>Glioblastoma is the most aggressive primary malignant brain tumor in adults [<xref ref-type="bibr" rid="B1">1</xref>]. The current standard treatment for glioblastoma after surgical resection is combined radiotherapy and chemotherapy using temozolamide (TMZ) or TMZ combined with other chemotherapeutic agents. Despite these treatments, glioblastoma remains a fatal disease and the overall survival is approximately 14.6&#xa0;months within five years [<xref ref-type="bibr" rid="B2">2</xref>, <xref ref-type="bibr" rid="B3">3</xref>]. However, the current treatment strategies are considered palliative, with the aim being to improve patient survival and maintain a good quality of life. Several biomarkers are still used in clinical practice to improve the diagnostic and prognostic status of glioblastoma. One of these markers are IDH1<sup>R132H</sup> mutation and <italic>MGMT</italic> gene promoter methylation. The <italic>IDH1</italic> gene, which encodes cytosolic NADP &#x2b; -dependent isocitrate dehydrogenase, was shown to correlate with outcome of patients with glioblastoma [<xref ref-type="bibr" rid="B4">4</xref>&#x2013;<xref ref-type="bibr" rid="B6">6</xref>]. The <italic>MGMT</italic>, which is a DNA repair protein that removes alkyl groups from several residues particularly the O6-position of guanine, is considered the most relevant for the action of an extensively used TMZ [<xref ref-type="bibr" rid="B7">7</xref>, <xref ref-type="bibr" rid="B8">8</xref>]. Because IDH1<sup>R132H</sup> mutation, is the most common variant mutation detected in most of cancers, particularly glioblastoma, we used specific monoclonal antibody (IMAB-1) targeted R131H residue.</p>
<p>The relationship of <italic>MGMT</italic> promoter methylation with <italic>IDH1</italic> mutation, treatment modalities and survival rates showed controversial results. Some studies revealed that glioblastomas with methylated <italic>MGMT</italic> promoter were more sensitive to chemotherapeutic agent (TMZ) resulting in a better survival rate [<xref ref-type="bibr" rid="B9">9</xref>&#x2013;<xref ref-type="bibr" rid="B11">11</xref>], while other studies revealed that <italic>MGMT</italic> promoter methylation was not associated with better overall survival (OS) [<xref ref-type="bibr" rid="B12">12</xref>, <xref ref-type="bibr" rid="B13">13</xref>]. Combs et&#x20;al. also found a none-favourable OS in a group of 160 patients with glioblastoma treated with radiotherapy and TMZ. In contrast, Millward et&#x20;al. demonstrated that the combination of methylated <italic>MGMT</italic> promoter and <italic>IDH1</italic> mutation was associated with considerably longer OS in a series of chemoradiotherapy-treated glioblastoma tumors [<xref ref-type="bibr" rid="B14">14</xref>]. Despite this controversy, both biomarkers are still considered prognostic factors in patients with glioblastoma.</p>
<p>In this study, we evaluated the impact of <italic>MGMT</italic> promoter methylation and <italic>IDH1</italic> mutation on the recurrence-free interval in patients with glioblastoma treated with different treatment modalities (radiotherapy and different types of chemotherapies). The chemotherapy protocol included temozolomide (TMZ) alone, or TMZ and other adjuvant therapies included (bevacizumab, irinotecan, lomustine, and etoposide). This study provided an additional justification to the previous controversial results in the literature. To our knowledge, this study is considered as a first research of such type performed in Saudi Arabian patients.</p>
</sec>
<sec sec-type="materials|methods" id="s2">
<title>Materials and Methods</title>
<sec id="s2-1">
<title>Patients and Stratification</title>
<p>The study included 82 patients with completely resected glioblastoma from two medical institutions in Saudi Arabia in the period of 2014&#x2013;2019. This study was approved by the National Biomedical Ethics Committee at King Abdulaziz University (HA-02-J-008) under a general ethical report. All patients underwent complete surgical resection of the tumor followed by a standard protocol of chemoradiotherapy. The histological diagnosis was made based on classification of the World Health Organization (WHO). Clinical data were retrieved from the hospital records and included patient age at diagnosis, gender, post-operative adjuvant therapies, <italic>MGMT</italic> methylation profile, and <italic>IDH1</italic> results. The patients were stratified into different groups based on the adjuvant therapies (<xref ref-type="fig" rid="F1">Figure&#x20;1</xref>). Standard radiotherapy of a total dose of 60&#x20;Gy and TMZ (150&#x2013;200&#xa0;mg/m<sup>2</sup> for 6&#x2013;12 cycles) was given to all patients at the time of management. The chemotherapy protocol included temozolomide (TMZ) alone, or TMZ and other adjuvant therapies included (bevacizumab, irinotecan, lomustine, and etoposide). All patients enrolled in this study have passed away. Those who had late recurrence died because of other comorbidities. The only limitation should be clarified that the total number of cases analyzed in this study is still considered small. Despite this limitation, this is the first study in Saudi Arabia that explore the impact of MGMT methylation and IDH1 on tumour recurrence in patients receiving different type of treatment modalities.</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption>
<p>Schematic distribution of patient groups in the study group. Cases with totally resected glioblastoma were stratified into groups based on <italic>IDH1</italic> mutation, <italic>MGMT</italic> promoter methylation, and adjuvant therapies.</p>
</caption>
<graphic xlink:href="pore-27-1609778-g001.tif"/>
</fig>
</sec>
<sec id="s2-2">
<title>Assessment of IDH1 Mutation</title>
<p>
<italic>IDH1</italic> mutation was evaluated by immunohistochemistry. Anti-<italic>IDH1</italic> <sup>R132H</sup> mouse monoclonal antibody (clone H09) was used to identify wild-type and mutant IDH1 in formalin-fixed paraffin-embedded (FFPE) sections using a BenchMark XT automated staining system from Ventana. Sections in which &#x3e;10% of tumor cells positively stained were defined as <italic>IDH1</italic> mutant.</p>
</sec>
<sec id="s2-3">
<title>Assessment of MGMT Promoter Methylation</title>
<p>
<italic>MGMT</italic> promoter methylation was assessed in the hospitals at time of histopathological diagnosis by using two different techniques: methylation-specific polymerase chain reaction (MSP) or pyrosequencing method using Qiagen.</p>
<p>First method used: Qualitative methylation-specific PCR (MSP). The regions were selected from which DNA could be extracted. DNA extraction was performed using the QIAamp DNA FFPE tissue kit according to the manufacturer&#x2019;s instructions. DNA quantity and quality were determined using a NanoDrop spectrophotometer at A260/A280 and A260/A230. The concentration of DNA samples was normalized to 50&#xa0;ng and bisulfite-converted using the EpiTect Bisulfite Kit (Qiagen) according to the manufacturer&#x2019;s instructions. The forward and reverse primers targeting methylated and unmethylated exon 1 of the human <italic>MGMT</italic> gene correspond to those described by Esteller et&#x20;al. [<xref ref-type="bibr" rid="B15">15</xref>]. The PCR Kit used was HotStarTaq plus DNA polymerase (Qiagen). Thermal cycling on a Veriti thermal cycler included an initial step at 95&#xb0;C for 2&#xa0;min followed by 40 cycles of 30&#xa0;s at 94&#xb0;C, 30&#xa0;s at 52&#xb0;C, and 30&#xa0;s at 72&#xb0;C for 10&#xa0;min. The PCR products were visualized on 8% non-denaturing polyacrylamide gels and stained with ethidium bromide. Samples having only methylated PCR products and samples having both methylated and non-methylated PCR products were both scored as methylation positive.</p>
<p>Second method used: Pyrosequencing technique. The MGMT pyro Kit from Qiagen has been used for quantitative measurement of methylation at four CpG sites in exon 1 of human MGMT gene (genomic sequence on chromosome 10 from 131,265,519 to 131,265,537 sequencing from 72 to 90 on MGMT mRNA. DNA extraction was performed using the QIAamp DNA FFPE tissue kit according to the manufacturer&#x2019;s instructions. DNA quantity and quality were determined using a NanoDrop spectrophotometer. The concentration of DNA samples was normalized to 50&#xa0;ng and bisulfite-converted using the EpiTect Bisulfite Kit (Qiagen) according to the manufacturer&#x2019;s recommendation. The Thera screen MGMT PyroKit and PyroMark Q24 system were both used to assess the methylation status. DNA was amplified by PCR while single-stranded DNA was prepared, sequenced, and finally analyzed on PyroMark Q24. The methylated control DNA was included in the kit as a positive control for PCR and sequencing reaction. The procedure corresponds to what has been described by Pangopoulos et&#x20;al&#x20;[<xref ref-type="bibr" rid="B16">16</xref>].</p>
</sec>
<sec id="s2-4">
<title>Statistical Methods</title>
<p>Data are described as frequencies and percentages. Pearson&#x2019;s Chi-Square and Fisher&#x2019;s Exact tests were used to explore the association of <italic>IDH1</italic> mutation, <italic>MGMT</italic> promoter methylation status, and chemotherapies with various study factors. Kaplan&#x2013;Meier curves and log-rank test were used to compare the distribution of recurrence-free interval. Recurrence-free interval was defined as the period from the beginning of adjuvant therapy after surgical resection to the possible first date of recurrence. In survival analysis, the term &#x201c;event&#x201d; is usually used to measure the occurrence of an event of interest (such as death, recurrence, and recovery). In our study, the event of interest is &#x201c;recurrence.&#x201d; The &#x201c;number of cases at risk&#x201d; defines how many cases will be at risk in the end of a specified time point. Being &#x201c;at risk&#x201d; clarifies that the patient has not had a recurrence before a time and is not censored before or at time. Moreover, the number of events&#x201d; measures that number of cases for which an event of interest is observed. All statistical analyses in this study were performed using IBM SPSS1 ver. 24 statistical software programs (SPSS Inc. Chicago, IL, United&#x20;States).</p>
</sec>
</sec>
<sec sec-type="results" id="s3">
<title>Results</title>
<p>A total of 82 glioblastoma patients with complete resection and who received treatment were included in this study. The patient and tumor characteristics of the study group are listed in <xref ref-type="table" rid="T1">Table&#x20;1</xref>. The mean patient age was 48&#xa0;years old (&#x3c;50&#xa0;years old, <italic>n</italic>&#x20;&#x3d; 32; &#x2265;50&#xa0;years old, <italic>n</italic>&#x20;&#x3d; 50), and 58.5% of the study group was male (<italic>n</italic>&#x20;&#x3d; 48). <italic>IDH1</italic> mutation was found in 32 cases (39%) and the remaining 50 cases (61%) were <italic>IDH1</italic> wildtype. The <italic>MGMT</italic> promoter was methylated in 28 patients (34.1%) and unmethylated in 54 cases (65.9%). After complete tumor resection, 62 patients (75.6%) received chemoradiotherapy while 20 patients (24.4%) only received radiotherapy. Among those who received chemoradiotherapy, approximately 72.5% (<italic>n</italic>&#x20;&#x3d; 45) received TMZ alone while 27.5% (<italic>n</italic>&#x20;&#x3d; 17) received TMZ along with other chemotherapies included bevacizumab, irinotecan, lomustine, or etoposide. Approximately 61% (<italic>n</italic>&#x20;&#x3d; 50) had tumor recurrence after 1&#xa0;year, while 39% (<italic>n</italic>&#x20;&#x3d; 32) showed recurrence before 1&#xa0;year of the adjuvant therapies.</p>
<table-wrap id="T1" position="float">
<label>TABLE 1</label>
<caption>
<p>Patient and tumor characteristics of the study group (<italic>n</italic>&#x20;&#x3d; 82).</p>
</caption>
<table>
<thead valign="top">
<tr>
<th align="left">Characteristic</th>
<th align="center">
<italic>n</italic> (%)</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">Age</td>
<td align="left"/>
</tr>
<tr>
<td align="left">&#x2003;Mean</td>
<td align="center">48.4</td>
</tr>
<tr>
<td align="left">Age group</td>
<td align="left"/>
</tr>
<tr>
<td align="left">&#x2003;&#x3c;50&#xa0;years</td>
<td align="center">32 (39.0%)</td>
</tr>
<tr>
<td align="left">&#x2003;&#x2265;50&#xa0;years</td>
<td align="center">50 (61.0%)</td>
</tr>
<tr>
<td align="left">Gender</td>
<td align="left"/>
</tr>
<tr>
<td align="left">&#x2003;Female</td>
<td align="center">34 (41.5%)</td>
</tr>
<tr>
<td align="left">&#x2003;Male</td>
<td align="center">48 (58.5%)</td>
</tr>
<tr>
<td align="left">
<italic>IDH1</italic> mutation status</td>
<td align="left"/>
</tr>
<tr>
<td align="left">&#x2003;IDH1 mutant</td>
<td align="center">32 (39.0%)</td>
</tr>
<tr>
<td align="left">&#x2003;IDH1 wildtype</td>
<td align="center">50 (61.0%)</td>
</tr>
<tr>
<td align="left">
<italic>MGMT</italic> promoter methylation</td>
<td align="left"/>
</tr>
<tr>
<td align="left">&#x2003;Methylation</td>
<td align="center">28 (34.1%)</td>
</tr>
<tr>
<td align="left">&#x2003;Unmethylated</td>
<td align="center">54 (65.9%)</td>
</tr>
<tr>
<td align="left">Adjuvant therapy</td>
<td align="left"/>
</tr>
<tr>
<td align="left">&#x2003;Radiotherapy</td>
<td align="center">20 (24.4%)</td>
</tr>
<tr>
<td align="left">&#x2003;Radiotherapy and chemotherapy</td>
<td align="center">62 (75.6%)</td>
</tr>
<tr>
<td align="left">Chemotherapy</td>
<td align="left"/>
</tr>
<tr>
<td align="left">&#x2003;Temozolomide</td>
<td align="center">45 (72.5%)</td>
</tr>
<tr>
<td align="left">&#x2003;Temozolomide plus others</td>
<td align="center">17 (27.5%)</td>
</tr>
<tr>
<td align="left">Recurrence</td>
<td align="left"/>
</tr>
<tr>
<td align="left">&#x2003;Before 1&#xa0;year</td>
<td align="center">32 (39.0%)</td>
</tr>
<tr>
<td align="left">&#x2003;After 1&#xa0;year</td>
<td align="center">50 (61.0%)</td>
</tr>
</tbody>
</table>
</table-wrap>
<sec id="s3-1">
<title>IDH1 Mutation and MGMT Methylation in Glioblastoma Patients</title>
<p>Although wildtype <italic>IDH1</italic> was frequently found in glioblastoma patients with unmethylated <italic>MGMT</italic> promoter, there was no significant relationship between <italic>IDH1</italic> mutation and <italic>MGMT</italic> promoter methylation in the study group (<italic>p</italic>-value &#x3d; 0.972) (<xref ref-type="table" rid="T2">Table&#x20;2</xref>).</p>
<table-wrap id="T2" position="float">
<label>TABLE 2</label>
<caption>
<p>Relationship between <italic>IDH1</italic> mutation and <italic>MGMT</italic> promoter methylation in glioblastoma patients.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th align="left"/>
<th align="center">
<italic>MGMT</italic> methylation (<italic>n</italic>&#x20;&#x3d; 28)</th>
<th align="center">Unmethylated <italic>MGMT</italic> (<italic>n</italic>&#x20;&#x3d; 54)</th>
<th align="center">Total (<italic>n</italic>&#x20;&#x3d; 82)</th>
<th align="center">
<italic>p</italic>-value</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">
<italic>IDH</italic> status</td>
<td align="left"/>
<td align="left"/>
<td align="left"/>
<td align="char" char=".">0.972<xref ref-type="table-fn" rid="Tfn1">
<sup>a</sup>
</xref>
</td>
</tr>
<tr>
<td align="left">&#x2003;<italic>IDH1</italic> mutant</td>
<td align="center">11.0 (39.3%)</td>
<td align="center">21.0 (38.9%)</td>
<td align="center">32.0 (39.0%)</td>
<td align="left"/>
</tr>
<tr>
<td align="left">&#x2003;<italic>IDH1</italic> wildtype</td>
<td align="center">17.0 (60.7%)</td>
<td align="center">33.0 (61.1%)</td>
<td align="center">50.0 (61.0%)</td>
<td align="left"/>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>Data are shown as <italic>n</italic> (%).</p>
</fn>
<fn id="Tfn1">
<label>
<sup>a</sup>
</label>
<p>Pearson&#x27;s Chi-squared&#x20;test.</p>
</fn>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="s3-2">
<title>Relationship of Age and IDH1 Mutation or MGMT Methylation Status With Recurrence-Free Interval in Glioblastoma Patients</title>
<p>Among patients less than 50&#xa0;years of age, a significant difference was observed in recurrence-free interval between glioblastomas with <italic>IDH1</italic> mutation and wildtype <italic>IDH1</italic> (<italic>p</italic>-value &#x3d; 0.014) (<xref ref-type="table" rid="T3">Table&#x20;3</xref>). These results indicated that <italic>IDH1</italic> mutant cases showed a late recurrence rate compared with those with wildtype <italic>IDH1</italic> (<xref ref-type="fig" rid="F2">Figure&#x20;2A</xref>). In contrast, patients over 50&#xa0;years of age did not show any significant difference in recurrence-free interval, regardless of <italic>IDH1</italic> status. There was no significant difference in recurrence-free interval among glioblastoma patients based on age and <italic>MGMT</italic> promoter methylation status.</p>
<table-wrap id="T3" position="float">
<label>TABLE 3</label>
<caption>
<p>The relationship between age, <italic>IDH1</italic> mutation, and <italic>MGMT</italic> promoter methylation in glioblastoma patients and one-year recurrence-free interval.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th rowspan="2" align="left"/>
<th rowspan="2" align="left"/>
<th rowspan="2" align="left"/>
<th rowspan="2" align="left"/>
<th colspan="4" align="center">Recurrence-free interval</th>
</tr>
<tr>
<th colspan="2" align="center">&#x3c;1&#xa0;year</th>
<th colspan="2" align="center">&#x2265;1&#xa0;year</th>
<th align="center">
<italic>p</italic>-value<xref ref-type="table-fn" rid="Tfn2">
<sup>a</sup>
</xref>
<sup>,</sup>
<xref ref-type="table-fn" rid="Tfn3">
<sup>b</sup>
</xref>
</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td rowspan="4" align="left">Age</td>
<td rowspan="2" align="center">&#x3c;50&#xa0;years</td>
<td rowspan="2" align="center">
<italic>IDH1</italic> status</td>
<td align="left">
<italic>IDH1</italic> mutant</td>
<td align="char" char=".">3</td>
<td align="left">(17.6%)</td>
<td align="char" char=".">14</td>
<td align="left">(82.4%)</td>
<td align="char" char=".">0.014<xref ref-type="table-fn" rid="Tfn2">
<sup>a</sup>
</xref>
</td>
</tr>
<tr>
<td align="left">
<italic>IDH1</italic> wildtype</td>
<td align="char" char=".">9</td>
<td align="left">(60.0%)</td>
<td align="char" char=".">6</td>
<td align="left">(40.0%)</td>
<td align="left"/>
</tr>
<tr>
<td rowspan="2" align="center">&#x2265;50&#xa0;years</td>
<td rowspan="2" align="left"/>
<td align="left">
<italic>IDH1</italic> mutant</td>
<td align="char" char=".">3</td>
<td align="left">(20.0%)</td>
<td align="char" char=".">12</td>
<td align="left">(80.0%)</td>
<td align="char" char=".">0.059<xref ref-type="table-fn" rid="Tfn2">
<sup>a</sup>
</xref>
</td>
</tr>
<tr>
<td align="left">
<italic>IDH1</italic> wildtype</td>
<td align="char" char=".">17</td>
<td align="left">(48.6%)</td>
<td align="char" char=".">18</td>
<td align="left">(51.4%)</td>
<td align="left"/>
</tr>
<tr>
<td rowspan="4" align="left">Age</td>
<td rowspan="2" align="center">&#x3c;50&#xa0;years</td>
<td rowspan="2" align="center">
<italic>MGMT</italic> status</td>
<td align="left">Methylation</td>
<td align="char" char=".">5</td>
<td align="left">(50.0%)</td>
<td align="char" char=".">5</td>
<td align="left">(50.0%)</td>
<td align="char" char=".">0.438<xref ref-type="table-fn" rid="Tfn3">
<sup>b</sup>
</xref>
</td>
</tr>
<tr>
<td align="left">Unmethylated</td>
<td align="char" char=".">7</td>
<td align="left">(31.8%)</td>
<td align="char" char=".">15</td>
<td align="left">(68.2%)</td>
<td align="left"/>
</tr>
<tr>
<td rowspan="2" align="center">&#x2265;50&#xa0;years</td>
<td rowspan="2" align="left"/>
<td align="left">Methylation</td>
<td align="char" char=".">5</td>
<td align="left">(27.8%)</td>
<td align="char" char=".">13</td>
<td align="left">(72.2%)</td>
<td align="char" char=".">0.188<xref ref-type="table-fn" rid="Tfn2">
<sup>a</sup>
</xref>
</td>
</tr>
<tr>
<td align="left">Unmethylated</td>
<td align="char" char=".">15</td>
<td align="left">(46.9%)</td>
<td align="char" char=".">17</td>
<td align="left">(53.1%)</td>
<td align="left"/>
</tr>
<tr>
<td rowspan="4" align="left">
<italic>IDH1</italic> status</td>
<td rowspan="2" align="center">
<italic>IDH1</italic> mutant</td>
<td rowspan="2" align="center">Adjuvant therapy</td>
<td align="left">Radiation</td>
<td align="char" char=".">1</td>
<td align="left">(33.3%)</td>
<td align="char" char=".">2</td>
<td align="left">(66.7%)</td>
<td align="char" char=".">0.476<xref ref-type="table-fn" rid="Tfn3">
<sup>b</sup>
</xref>
</td>
</tr>
<tr>
<td align="left">Chemoradiotherapy</td>
<td align="char" char=".">5</td>
<td align="left">(17.2%)</td>
<td align="char" char=".">24</td>
<td align="left">(82.8%)</td>
<td align="left"/>
</tr>
<tr>
<td rowspan="2" align="center">
<italic>IDH1</italic> wildtype</td>
<td rowspan="2" align="left"/>
<td align="left">Radiation</td>
<td align="char" char=".">11</td>
<td align="left">(64.7%)</td>
<td align="char" char=".">6</td>
<td align="left">(35.3%)</td>
<td align="char" char=".">0.197<xref ref-type="table-fn" rid="Tfn2">
<sup>a</sup>
</xref>
</td>
</tr>
<tr>
<td align="left">Chemoradiotherapy</td>
<td align="char" char=".">15</td>
<td align="left">(45.5%)</td>
<td align="char" char=".">18</td>
<td align="left">(54.5%)</td>
<td align="left"/>
</tr>
<tr>
<td rowspan="4" align="left">
<italic>MGMT</italic> status</td>
<td rowspan="2" align="center">Methylated</td>
<td rowspan="2" align="center">Adjuvant therapy</td>
<td align="left">Radiation</td>
<td align="char" char=".">1</td>
<td align="left">(50.0%)</td>
<td align="char" char=".">1</td>
<td align="left">(50.0%)</td>
<td align="char" char=".">0.999<xref ref-type="table-fn" rid="Tfn3">
<sup>b</sup>
</xref>
</td>
</tr>
<tr>
<td align="left">Chemoradiotherapy</td>
<td align="char" char=".">9</td>
<td align="left">(34.6%)</td>
<td align="char" char=".">17</td>
<td align="left">(65.4%)</td>
<td align="left"/>
</tr>
<tr>
<td rowspan="2" align="center">Unmethylated</td>
<td rowspan="2" align="left"/>
<td align="left">Radiation</td>
<td align="char" char=".">11</td>
<td align="left">(61.1%)</td>
<td align="char" char=".">7</td>
<td align="left">(38.9%)</td>
<td align="char" char=".">0.031<xref ref-type="table-fn" rid="Tfn2">
<sup>a</sup>
</xref>
</td>
</tr>
<tr>
<td align="left">Chemoradiotherapy</td>
<td align="char" char=".">11</td>
<td align="left">(30.6%)</td>
<td align="char" char=".">25</td>
<td align="left">(69.4%)</td>
<td align="left"/>
</tr>
<tr>
<td rowspan="4" align="left">
<italic>IDH1</italic> status</td>
<td rowspan="2" align="center">
<italic>IDH1</italic> mutant</td>
<td rowspan="2" align="center">Chemotherapy</td>
<td align="left">TMZ</td>
<td align="char" char=".">5</td>
<td align="left">(23.8%)</td>
<td align="char" char=".">16</td>
<td align="left">(76.2%)</td>
<td align="char" char=".">0.283<xref ref-type="table-fn" rid="Tfn3">
<sup>b</sup>
</xref>
</td>
</tr>
<tr>
<td align="left">TMZ plus others</td>
<td align="char" char=".">0</td>
<td align="left">(0.0%)</td>
<td align="char" char=".">8</td>
<td align="left">(100.0%)</td>
<td align="left"/>
</tr>
<tr>
<td rowspan="2" align="center">
<italic>IDH1</italic> wildtype</td>
<td rowspan="2" align="left"/>
<td align="left">TMZ</td>
<td align="char" char=".">15</td>
<td align="left">(60.0%)</td>
<td align="char" char=".">10</td>
<td align="left">(40.0%)</td>
<td align="char" char=".">0.118<xref ref-type="table-fn" rid="Tfn3">
<sup>b</sup>
</xref>
</td>
</tr>
<tr>
<td align="left">TMZ plus others</td>
<td align="char" char=".">2</td>
<td align="left">(22.2%)</td>
<td align="char" char=".">7</td>
<td align="left">(77.8%)</td>
<td align="left"/>
</tr>
<tr>
<td rowspan="4" align="left">
<italic>MGMT</italic> status</td>
<td rowspan="2" align="center">Methylated</td>
<td rowspan="2" align="center">Chemotherapy</td>
<td align="left">TMZ</td>
<td align="char" char=".">8</td>
<td align="left">(42.1%)</td>
<td align="char" char=".">11</td>
<td align="left">(57.9%)</td>
<td align="char" char=".">0.666<xref ref-type="table-fn" rid="Tfn3">
<sup>b</sup>
</xref>
</td>
</tr>
<tr>
<td align="left">TMZ plus others</td>
<td align="char" char=".">2</td>
<td align="left">(25.0%)</td>
<td align="char" char=".">6</td>
<td align="left">(75.0%)</td>
<td align="left"/>
</tr>
<tr>
<td rowspan="2" align="center">Unmethylated</td>
<td rowspan="2" align="left"/>
<td align="left">TMZ</td>
<td align="char" char=".">12</td>
<td align="left">(44.4%)</td>
<td align="char" char=".">15</td>
<td align="left">(55.6%)</td>
<td align="char" char=".">0.016<xref ref-type="table-fn" rid="Tfn3">
<sup>b</sup>
</xref>
</td>
</tr>
<tr>
<td align="left">TMZ plus others</td>
<td align="char" char=".">0</td>
<td align="left">(0%)</td>
<td align="char" char=".">9</td>
<td align="left">(100.0%)</td>
<td align="left"/>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>&#x2a;Data are shown as n (%).</p>
</fn>
<fn id="Tfn2">
<label>
<sup>a</sup>
</label>
<p>
<italic>p</italic>-Values of Chi-Square&#x20;test.</p>
</fn>
<fn id="Tfn3">
<label>
<sup>b</sup>
</label>
<p>
<italic>p</italic>-Values of Fisher&#x2019;s Exact&#x20;test.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption>
<p>The relationship between <italic>IDH1</italic>-mutation status and <italic>MGMT</italic> promoter methylation with patients age, recurrence rate or type of chemotherapies. <bold>(A)</bold> Among patients younger than 50&#xa0;years of age, patients with <italic>IDH1</italic> mutation had a late recurrence after one year compared with patients with wildtype <italic>IDH1</italic>, <bold>(B)</bold> patients with unmethylated <italic>MGMT</italic> promoter had a recurrence after 1&#xa0;year of chemoradiotherapy compared with those who received only radiotherapy.</p>
</caption>
<graphic xlink:href="pore-27-1609778-g002.tif"/>
</fig>
</sec>
<sec id="s3-3">
<title>Relationship of IDH1 Mutation or MGMT Promoter Methylation and Adjuvant Therapies With Recurrence-Free Interval in Glioblastoma Patients</title>
<p>There was no significant difference in tumor recurrence among patients treated with any adjuvant therapy protocol regardless of <italic>IDH1</italic> status (<xref ref-type="table" rid="T3">Table&#x20;3</xref>). However, a difference was clearly seen among glioblastoma patients with unmethylated <italic>MGMT</italic> promoter who were treated with radiation vs. those who received chemoradiotherapy (<italic>p</italic>-value &#x3d; 0.031) (<xref ref-type="fig" rid="F2">Figure&#x20;2B</xref>). Among patients with <italic>MGMT</italic> promoter methylation, there was no significant difference in tumor recurrence interval regardless of the type adjuvant therapy.</p>
</sec>
<sec id="s3-4">
<title>Relationship of IDH1 Mutation or MGMT Promoter Methylation and the Type of Chemotherapy With Recurrence-Free Interval in Glioblastoma Patients</title>
<p>There was no significant relationship between the type of chemotherapy and recurrence-free interval in <italic>IDH1</italic> mutant or wildtype glioblastoma cases (<xref ref-type="fig" rid="F3">Figure&#x20;3</xref>) (<xref ref-type="table" rid="T3">Table&#x20;3</xref>). However, patients with <italic>MGMT</italic> promoter methylation showed significant differences in the recurrence-free interval. In patients with unmethylated <italic>MGMT</italic> promoter, those treated with TMZ and other chemotherapeutic agents showed late recurrence compared with those who were treated with TMZ alone (<italic>p</italic>-value &#x3d; 0.014) (<xref ref-type="table" rid="T3">Tables 3</xref>&#x2013;<xref ref-type="table" rid="T5">5</xref>).</p>
<fig id="F3" position="float">
<label>FIGURE 3</label>
<caption>
<p>Relationship between <italic>IDH1</italic> mutation status (<bold>(A)</bold> : IDH mutant, <bold>(B)</bold>: IDH wildtype), chemotherapy, and recurrence-free interval. TMZ alone or combined with chemotherapies did not significantly affect tumor recurrence interval in <italic>IDH1</italic> mutant and wildtype glioblastoma patients.</p>
</caption>
<graphic xlink:href="pore-27-1609778-g003.tif"/>
</fig>
<table-wrap id="T4" position="float">
<label>TABLE 4</label>
<caption>
<p>The association between <italic>IDH1</italic> mutation and <italic>MGMT</italic> methylation status with recurrence-free interval within 3&#x20;years among glioblastoma patients treated with radiotherapy or chemoradiotherapy.</p>
</caption>
<table>
<thead>
<tr>
<th rowspan="2" align="left"/>
<th align="left"/>
<th align="left"/>
<th align="left"/>
<th align="left"/>
<th colspan="2" align="center">95% CI</th>
</tr>
<tr>
<th align="center">Period in months</th>
<th align="center">Number risk at end of interval</th>
<th align="center">Number of cases recurred</th>
<th align="center">Recurrence free %</th>
<th align="center">Lower</th>
<th align="center">Upper</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">
<italic>IDH1</italic> mutant</td>
<td align="left"/>
<td align="left"/>
<td align="left"/>
<td align="left"/>
<td align="left"/>
<td align="left"/>
</tr>
<tr>
<td align="left">&#x2003;Radiation</td>
<td align="center">12</td>
<td align="center">2</td>
<td align="center">1</td>
<td align="center">66.7%</td>
<td align="center">30.0%</td>
<td align="center">100.0%</td>
</tr>
<tr>
<td align="left">&#x2003;Radiation</td>
<td align="center">24</td>
<td align="center">2</td>
<td align="center">0</td>
<td align="center">66.7%</td>
<td align="center">30.0%</td>
<td align="center">100.0%</td>
</tr>
<tr>
<td align="left">&#x2003;Chemoradiotherapy</td>
<td align="center">12</td>
<td align="center">24</td>
<td align="center">5</td>
<td align="center">82.8%</td>
<td align="center">70.1%</td>
<td align="center">97.7%</td>
</tr>
<tr>
<td align="left">&#x2003;Chemoradiotherapy</td>
<td align="center">24</td>
<td align="center">13</td>
<td align="center">11</td>
<td align="center">44.8%</td>
<td align="center">29.9%</td>
<td align="center">67.1%</td>
</tr>
<tr>
<td align="left">
<italic>IDH1</italic> wildtype</td>
<td align="left"/>
<td align="left"/>
<td align="left"/>
<td align="left"/>
<td align="left"/>
<td align="left"/>
</tr>
<tr>
<td align="left">&#x2003;Radiation</td>
<td align="center">12</td>
<td align="center">6</td>
<td align="center">11</td>
<td align="center">35.3%</td>
<td align="center">18.5%</td>
<td align="center">67.2%</td>
</tr>
<tr>
<td align="left">&#x2003;Radiation</td>
<td align="center">24</td>
<td align="center">3</td>
<td align="center">3</td>
<td align="center">17.6%</td>
<td align="center">6.3%</td>
<td align="center">49.3%</td>
</tr>
<tr>
<td align="left">&#x2003;Chemoradiotherapy</td>
<td align="center">12</td>
<td align="center">19</td>
<td align="center">14</td>
<td align="center">57.6%</td>
<td align="center">43.0%</td>
<td align="center">77.2%</td>
</tr>
<tr>
<td align="left">&#x2003;Chemoradiotherapy</td>
<td align="center">24</td>
<td align="center">6</td>
<td align="center">13</td>
<td align="center">15.2%</td>
<td align="center">6.8%</td>
<td align="center">34.0%</td>
</tr>
<tr>
<td align="left">
<italic>MGMT</italic> methylation</td>
<td align="left"/>
<td align="left"/>
<td align="left"/>
<td align="left"/>
<td align="left"/>
<td align="left"/>
</tr>
<tr>
<td align="left">&#x2003;Radiation</td>
<td align="center">12</td>
<td align="center">1</td>
<td align="center">0</td>
<td align="center">100.0%&#x2009;</td>
<td align="center">100.0%</td>
<td align="center">100.0%</td>
</tr>
<tr>
<td align="left">&#x2003;Radiation</td>
<td align="center">24</td>
<td align="center">1</td>
<td align="center">0</td>
<td align="center">100.0%</td>
<td align="center">100.0%</td>
<td align="center">100.0%</td>
</tr>
<tr>
<td align="left">&#x2003;Chemoradiotherapy</td>
<td align="center">12</td>
<td align="center">9</td>
<td align="center">1</td>
<td align="center">90.0%</td>
<td align="center">73.2%</td>
<td align="center">100.0%</td>
</tr>
<tr>
<td align="left">&#x2003;Chemoradiotherapy</td>
<td align="center">24</td>
<td align="center">7</td>
<td align="center">2</td>
<td align="center">70.0%</td>
<td align="center">46.7%</td>
<td align="center">100.0%</td>
</tr>
<tr>
<td align="left">&#x2003;Chemoradiotherapy</td>
<td align="center">36</td>
<td align="center">4</td>
<td align="center">3</td>
<td align="center">40.0%</td>
<td align="center">18.7%</td>
<td align="center">85.5%</td>
</tr>
<tr>
<td align="left">Unmethylated <italic>MGMT</italic>
</td>
<td align="left"/>
<td align="left"/>
<td align="left"/>
<td align="left"/>
<td align="left"/>
<td align="left"/>
</tr>
<tr>
<td align="left">&#x2003;Radiation</td>
<td align="center">12</td>
<td align="center">1</td>
<td align="center">1</td>
<td align="center">50.0%</td>
<td align="center">12.5%</td>
<td align="center">100.0%</td>
</tr>
<tr>
<td align="left">&#x2003;Radiation</td>
<td align="center">24</td>
<td align="center">1</td>
<td align="center">0</td>
<td align="center">50.0%</td>
<td align="center">12.5%</td>
<td align="center">100.0%</td>
</tr>
<tr>
<td align="left">&#x2003;Chemoradiotherapy</td>
<td align="center">12</td>
<td align="center">15</td>
<td align="center">4</td>
<td align="center">78.9%</td>
<td align="center">62.6%</td>
<td align="center">99.6%</td>
</tr>
<tr>
<td align="left">&#x2003;Chemoradiotherapy</td>
<td align="center">24</td>
<td align="center">6</td>
<td align="center">9</td>
<td align="center">31.6%</td>
<td align="center">16.3%</td>
<td align="center">61.2%</td>
</tr>
<tr>
<td align="left">&#x2003;Chemoradiotherapy</td>
<td align="center">36</td>
<td align="center">3</td>
<td align="center">3</td>
<td align="center">15.8%</td>
<td align="center">5.6%</td>
<td align="center">44.6%</td>
</tr>
</tbody>
</table>
<table>
<thead>
<tr>
<td rowspan="2" align="left">Levels</td>
<td align="left"/>
<td align="left"/>
<td align="left"/>
<td align="left"/>
<td colspan="2" align="center">95% CI</td>
</tr>
<tr>
<td align="center">Time</td>
<td align="center">Number risk at end of interval</td>
<td align="center">Number of cases recurred</td>
<td align="center">Recurrence free %</td>
<td align="center">Lower</td>
<td align="center">Upper</td>
</tr>
</thead>
<tbody>
<tr>
<td align="left">Unmethylated <italic>MGMT IDH1</italic> mutant</td>
<td align="left"/>
<td align="left"/>
<td align="left"/>
<td align="left"/>
<td align="left"/>
<td align="left"/>
</tr>
<tr>
<td align="left">&#x2003;Temozolomide</td>
<td align="center">12</td>
<td align="center">9</td>
<td align="center">4</td>
<td align="center">69.2%</td>
<td align="center">48.2%</td>
<td align="center">99.5%</td>
</tr>
<tr>
<td align="left">&#x2003;Temozolomide</td>
<td align="center">24</td>
<td align="center">4</td>
<td align="center">5</td>
<td align="center">30.8%</td>
<td align="center">13.6%</td>
<td align="center">69.5%</td>
</tr>
<tr>
<td align="left">&#x2003;Temozolomide</td>
<td align="center">36</td>
<td align="center">2</td>
<td align="center">2</td>
<td align="center">15.4%</td>
<td align="center">4.3%</td>
<td align="center">55.0%</td>
</tr>
<tr>
<td align="left">&#x2003;Temozolomide &#x2b; Others</td>
<td align="center">12</td>
<td align="center">6</td>
<td align="center">0</td>
<td align="center">100.0%</td>
<td align="center">100.0%</td>
<td align="center">100.0%</td>
</tr>
<tr>
<td align="left">&#x2003;Temozolomide &#x2b; Others</td>
<td align="center">24</td>
<td align="center">2</td>
<td align="center">4</td>
<td align="center">33.3%</td>
<td align="center">10.8%</td>
<td align="center">100.0%</td>
</tr>
<tr>
<td align="left">&#x2003;Temozolomide &#x2b; Others</td>
<td align="center">36</td>
<td align="center">1</td>
<td align="center">1</td>
<td align="center">16.7%</td>
<td align="center">2.8%</td>
<td align="center">99.7%</td>
</tr>
<tr>
<td align="left">Unmethylated <italic>MGMT IDH1</italic> wildtype</td>
<td align="left"/>
<td align="left"/>
<td align="left"/>
<td align="left"/>
<td align="left"/>
<td align="left"/>
</tr>
<tr>
<td align="left">&#x2003;Temozolomide</td>
<td align="center">12</td>
<td align="center">7</td>
<td align="center">7</td>
<td align="center">50.0%</td>
<td align="center">29.6%</td>
<td align="center">84.4%</td>
</tr>
<tr>
<td align="left">&#x2003;Temozolomide</td>
<td align="center">24</td>
<td align="center">2</td>
<td align="center">5</td>
<td align="center">14.3%</td>
<td align="center">4.0%</td>
<td align="center">51.5%</td>
</tr>
<tr>
<td align="left">&#x2003;Temozolomide &#x2b; Others</td>
<td align="center">12</td>
<td align="center">3</td>
<td align="center">0</td>
<td align="center">100.0%</td>
<td align="center">100.0%</td>
<td align="center">100.0%</td>
</tr>
<tr>
<td align="left">&#x2003;Temozolomide &#x2b; Others</td>
<td align="center">24</td>
<td align="center">1</td>
<td align="center">3</td>
<td align="center">0.0%</td>
<td align="center">Na</td>
<td align="center">Na</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>CI: confidence interval; Na, not applicable.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<table-wrap id="T5" position="float">
<label>TABLE 5</label>
<caption>
<p>The association between IDH1-mutation, MGMT methylation and recurrence-free interval (days) in patients receiving TMZ with additional adjuvant chemotherapies.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th align="left">IDH1 status</th>
<th align="center">MGMT status</th>
<th align="center">Chemotherapies types</th>
<th align="center">RI</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">IDH-mutant</td>
<td align="left">MGMT hypermethylation</td>
<td align="left">TMZ &#x2b; bevacizumab</td>
<td align="char" char=".">1344</td>
</tr>
<tr>
<td align="left">IDH-wildtype</td>
<td align="left">MGMT hypermethylation</td>
<td align="left">TMZ &#x2b; bevacizumab</td>
<td align="char" char=".">140</td>
</tr>
<tr>
<td align="left">IDH-mutant</td>
<td align="left">MGMT hypermethylation</td>
<td align="left">TMZ &#x2b; irenotecan &#x2b; bevacizumab</td>
<td align="char" char=".">1096</td>
</tr>
<tr>
<td align="left">IDH-wildtype</td>
<td align="left">Unmethylated</td>
<td align="left">TMZ &#x2b; bevacizumab</td>
<td align="char" char=".">720</td>
</tr>
<tr>
<td align="left">IDH-wildtype</td>
<td align="left">MGMT hypermethylation</td>
<td align="left">TMZ &#x2b; bevacizumab</td>
<td align="char" char=".">340</td>
</tr>
<tr>
<td align="left">IDH-wildtype</td>
<td align="left">MGMT hypermethylation</td>
<td align="left">TMZ &#x2b; bevacizumab</td>
<td align="char" char=".">672</td>
</tr>
<tr>
<td align="left">IDH-wildtype</td>
<td align="left">MGMT hypermethylation</td>
<td align="left">TMZ &#x2b; irenotecan &#x2b; bevacizumab</td>
<td align="char" char=".">792</td>
</tr>
<tr>
<td align="left">IDH-mutant</td>
<td align="left">Unmethylated</td>
<td align="left">TMZ &#x2b; lomustine &#x2b; bevacizumab</td>
<td align="char" char=".">862</td>
</tr>
<tr>
<td align="left">IDH-wildtype</td>
<td align="left">Unmethylated</td>
<td align="left">TMZ &#x2b; bevacizumab</td>
<td align="char" char=".">487</td>
</tr>
<tr>
<td align="left">IDH-mutant</td>
<td align="left">Unmethylated</td>
<td align="left">TMZ &#x2b; bevacizumab</td>
<td align="char" char=".">540</td>
</tr>
<tr>
<td align="left">IDH-wildtype</td>
<td align="left">MGMT hypermethylation</td>
<td align="left">TMZ &#x2b; lomustine &#x2b; bevacizumab</td>
<td align="char" char=".">473</td>
</tr>
<tr>
<td align="left">IDH-wildtype</td>
<td align="left">MGMT hypermethylation</td>
<td align="left">TMZ &#x2b; bevacizumab</td>
<td align="char" char=".">826</td>
</tr>
<tr>
<td align="left">IDH-mutant</td>
<td align="left">Unmethylated</td>
<td align="left">TMZ &#x2b; bevacizumab</td>
<td align="char" char=".">1096</td>
</tr>
<tr>
<td align="left">IDH-mutant</td>
<td align="left">Unmethylated</td>
<td align="left">TMZ &#x2b; lomustine</td>
<td align="char" char=".">655</td>
</tr>
<tr>
<td align="left">IDH-wildtype</td>
<td align="left">Unmethylated</td>
<td align="left">TMZ &#x2b; bevacizumab &#x2b; etoposide</td>
<td align="char" char=".">1004</td>
</tr>
<tr>
<td align="left">IDH-wildtype</td>
<td align="left">Unmethylated</td>
<td align="left">TMZ &#x2b; bevacizumab</td>
<td align="char" char=".">549</td>
</tr>
<tr>
<td align="left">IDH-mutant</td>
<td align="left">Unmethylated</td>
<td align="left">TMZ &#x2b; bevacizumab</td>
<td align="char" char=".">534</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>&#x2a;RI: Recurrence interval.</p>
</fn>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="s3-5">
<title>Recurrence-Free Intervals Between Different Groups</title>
<p>
<italic>IDH1</italic>-mutant cases treated with only radiotherapy were 66.7% recurrence free at 12&#xa0;months of treatment while <italic>IDH1</italic>-mutant cases who received chemoradiotherapy were 82% recurrence free at 12&#xa0;months (<xref ref-type="table" rid="T4">Table&#x20;4</xref>). This clarified that chemoradiotherapy had a better beneficial outcome. In <italic>IDH1</italic>-wildtype glioblastoma cases treated with chemoradiotherapy showed 57.6% recurrence free in the 12<sup>th</sup>&#xa0;month, which is relatively higher than what was observed in <italic>IDH1</italic>-wildtype cases that received only radiation (35.3%), however; slightly opposite behavior was observed at 2&#xa0;years. Another example, cases with <italic>MGMT</italic> promoter methylation treated with chemoradiotherapy showed recurrence free of 90%, 70% and followed by 40% at 1, 2, and 3&#xa0;years, respectively. On the other hand, cases with unmethylated <italic>MGMT</italic> treated with chemoradiotherapy had recurrence free of (78.9, 31.6, and 15.8%) at 1, 2, and 3&#xa0;years, respectively. This interpretation was quite clear also for the type of chemotherapies used in the treatment of glioblastoma (See <xref ref-type="table" rid="T4">Table&#x20;4</xref>).</p>
</sec>
</sec>
<sec sec-type="discussion" id="s4">
<title>Discussion</title>
<p>Glioblastoma is the most aggressive primary malignant brain tumor in adults [<xref ref-type="bibr" rid="B1">1</xref>]. Both primary and secondary glioblastomas are pathologically indistinguishable, but they vary at the molecular level [<xref ref-type="bibr" rid="B2">2</xref>]. The disease remains fatal although the palliative treatment modalities given to the patients [<xref ref-type="bibr" rid="B2">2</xref>, <xref ref-type="bibr" rid="B3">3</xref>]. These treatments are currently dependent on several molecular markers including <italic>IDH1</italic> mutation and <italic>MGMT</italic>-gene promoter methylation. Despite the controversy on the impact of these biomarkers, they are still considered prognostic factors in patients with glioblastoma. While wildtype <italic>IDH1</italic> is present in 90% of primary glioblastomas [<xref ref-type="bibr" rid="B1">1</xref>], mutant <italic>IDH1</italic> is common in secondary glioblastomas and associated with increased patient survival [<xref ref-type="bibr" rid="B4">4</xref>, <xref ref-type="bibr" rid="B6">6</xref>]. Epigenetic-mediated silencing of the <italic>MGMT</italic> gene in glioblastoma by promoter methylation has also been shown to correlate with better OS. Use of <italic>IDH1</italic> combined with <italic>MGMT</italic> promoter as a stratification factor seems appropriate in clinical trials for the treatment of patients with secondary glioblastoma&#x20;[<xref ref-type="bibr" rid="B6">6</xref>].</p>
<p>In the present analysis, we evaluated the impact of <italic>MGMT</italic> promoter methylation as well as <italic>IDH1</italic> mutation status on recurrence-free interval (the period from beginning of adjuvant therapy after surgical resection to the possible first date of recurrence) in patients with glioblastoma. We used recurrence-free interval (RI) rather than OS as RI is more accurate and also doesn&#x2019;t provide false predictability in the outcome of glioblastoma patients.</p>
<p>Because our results found that there was no significant relationship between <italic>IDH1</italic> mutation and <italic>MGMT</italic> promoter methylation, both factors are considered prognostically independent (<xref ref-type="table" rid="T2">Table&#x20;2</xref>). This relationship can be considered significant if the age factor was included in the prognostic analysis. For example, we found that more glioblastoma patients younger than 50&#xa0;years old with <italic>IDH1</italic> mutant tumors had tumor recurrence after one year of treatment compared with those with <italic>IDH1</italic> wildtype (<xref ref-type="fig" rid="F2">Figure&#x20;2A</xref>; <xref ref-type="table" rid="T3">Table&#x20;3</xref>).</p>
<p>The impact of <italic>MGMT</italic> promoter methylation status in patients with glioblastoma also showed controversial results. Hegi et&#x20;al. showed that glioblastomas with methylated <italic>MGMT</italic> promoters were more sensitive to chemotherapeutic agents, including TMZ, resulting in an OS benefit for these patients [<xref ref-type="bibr" rid="B9">9</xref>]. Dunn et&#x20;al showed that a greater extent of methylation was associated with significantly longer OS [<xref ref-type="bibr" rid="B10">10</xref>]. Other studies in anaplastic gliomas have shown that <italic>MGMT</italic> promoter methylation status did not only influence patient outcome after chemotherapy but also impacted outcome after radiotherapy and may therefore be prognostic rather than predictive [<xref ref-type="bibr" rid="B11">11</xref>]. In contrast, other studies revealed that <italic>MGMT</italic> promoter methylation was not associated with better OS and progression-free survival; both endpoints were comparable in patients with expressed <italic>MGMT</italic> and those with <italic>MGMT</italic> silencing. The studies by Costa et&#x20;al. and Park et&#x20;al. on glioblastoma patients treated with TMZ-based chemoradiation revealed that <italic>MGMT</italic> promoter methylation was not associated with improved outcome [<xref ref-type="bibr" rid="B12">12</xref>, <xref ref-type="bibr" rid="B13">13</xref>]. Our study found that <italic>MGMT</italic> promoter methylation was not associated with a significant change in patient outcome. However, glioblastomas with unmethylated <italic>MGMT</italic> promoter, who received chemoradiotherapy mainly TMZ therapy, had a late tumor recurrence (<xref ref-type="fig" rid="F2">Figure&#x20;2B</xref>; <xref ref-type="table" rid="T3">Table&#x20;3</xref>). Hence, <italic>MGMT</italic> promoter methylation in glioblastoma cannot be considered as a significant factor for long survival.</p>
<p>The relationships between <italic>IDH1</italic> mutation and <italic>MGMT</italic> promoter methylation with the type of chemotherapies were also assessed independently with tumor recurrence interval. Our results found that glioblastoma cases, regardless of <italic>IDH1</italic> status, that were treated with TMZ or TMZ and additional chemotherapeutic agents did not show any difference in tumor recurrence interval (<xref ref-type="fig" rid="F3">Figure&#x20;3</xref>). This was completely different among cases in which <italic>MGMT</italic> methylation was the main independent factor. Although methylated <italic>MGMT</italic> promoter with <italic>IDH1</italic> mutant glioblastoma cases showed clinically significant results, the cases with unmethylated <italic>MGMT</italic> promoter and <italic>IDH1</italic> mutation treated with combined chemotherapies had significantly late tumor recurrence. These cases were mostly <italic>IDH1</italic> mutant (<xref ref-type="table" rid="T4">Table&#x20;4</xref>). This means that glioblastoma with wildtype <italic>IDH1</italic> and unmethylated <italic>MGMT</italic> promoter should be treated aggressively with combined chemotherapies (TMZ plus other chemotherapies) to improve overall survival. Two other studies also found conflicted findings. Combs et&#x20;al. analyzed a group of 160 patients with glioblastoma treated with radiotherapy and TMZ for the impact of <italic>MGMT</italic> promoter methylation and <italic>IDH1</italic> mutation. Unexpectedly, OS was no longer among the group of methylated <italic>MGMT</italic> promoter compared with patients without <italic>MGMT</italic> promoter methylation [<xref ref-type="bibr" rid="B17">17</xref>]. In contrast, Millward et&#x20;al. demonstrated that the combination of methylated <italic>MGMT</italic> and <italic>IDH1</italic> mutation was associated with considerably longer OS and PFS in a series of chemoradiotherapy-treated glioblastoma tumors [<xref ref-type="bibr" rid="B14">14</xref>]. Alassiri et&#x20;al. also found a positive impact of both <italic>MGMT</italic> methylation and <italic>IDH1</italic> mutation on the overall survival of Saudi patients with glioblastoma [<xref ref-type="bibr" rid="B18">18</xref>] but the study did not relate the findings with other treatment modalities. Another recent study by Pandith et&#x20;al investigated the relationship between IDH1/IDH2 mutations and MGMT methylation in patients receiving chemotherapies in different types of malignant gliomas (astrocytomas and oligodendrogliomas). Compared to our study, the only treatment modality used in their study was TMZ chemotherapy while IDH1/2 sequencing was the primary method to detect mutation. Using IDH1/IDH2 sequencing from fresh tissue nowadays are somewhat difficult either because of limited facilities or because the high cost of sequencing [<xref ref-type="bibr" rid="B19">19</xref>]. Our results concluded that <italic>IDH1</italic> mutation and <italic>MGMT gene</italic> promoter methylation are considered independent prognostic factors in glioblastoma. Although <italic>IDH1</italic> mutant glioblastomas showed late tumor recurrence in patients younger than 50&#xa0;years of age, the type of treatment modalities may not show additional beneficial outcome. Patients with unmethylated <italic>MGMT</italic> gene promoter with <italic>IDH1</italic> mutation, treated with chemoradiotherapy including TMZ had a late tumor recurrence while glioblastomas with wildtype <italic>IDH1</italic> and unmethylated <italic>MGMT</italic> gene promoter should be treated aggressively with radiotherapy and combined chemotherapies to delay tumor recurrence.</p>
<p>One limitation must be acknowledged in our study, that the total number of cases analyzed for <italic>MGMT</italic> promoter methylation and <italic>IDH1</italic> mutation are low. Despite this limitation, our report is the first study in Saudi Arabia that correlates these molecular biomarkers with recurrence-free interval in totally resected glioblastomas, reflecting the impact of adjuvant therapies as well as the specific type of chemotherapies on patient outcome.</p>
</sec>
<sec sec-type="conclusion" id="s5">
<title>Conclusion</title>
<p>This is the first paper to describe the role of IDH1 mutation and MGMT promoter methylation status in terms of overall survival and recurrence-free survival by patients group treated with different therapeutical modalities in Saudi Arabia. The impact of IDH mutations and MGMT promoter methylation on OS and PFS is extensively described in the literature. Our results highlighted the impact of these molecular biomarkers on different treatment modalities including radiotherapy and chemotherapies on glioblastoma outcome. Additional molecular studies and raising the sample size could increase the value of the investigation.</p>
</sec>
</body>
<back>
<sec id="s6">
<title>Data Availability Statement</title>
<p>The data that support the findings of this study are available from the corresponding author upon request.</p>
</sec>
<sec id="s7">
<title>Ethics Statement</title>
<p>The studies involving human participants were reviewed and approved by the National biomedical Ethics Committee of King Abdulaziz University (HA-02-J-008) which comply with the guidelines of the &#x201c;System of ethics of research&#x201d; prepared by the King Abdulaziz City for Science and Technology, and approved by Royal Decree No. M/59 on 24 August 2010. The patients/participants provided their written informed consent to participate in this&#x20;study.</p>
</sec>
<sec id="s8">
<title>Author Contributions</title>
<p>MK, idea, IRB submission, writing, study design and data analysis; NB, Statistical analysis; SB, data provider, writing, and analysis; BA, study design, writing, and editing; YM, data entry, tissue collection, and writing; AB, data entry, and tissue collection; RS, data entry, tissue collection, and writing; TA, data provider, writing, and analysis; NA, records collection, and data interpretation; MB, tissue processing, and IHC; AS, data provider, and writing; AL, data provider, and IRB submission.</p>
</sec>
<sec sec-type="COI-statement" id="s9">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<ack>
<p>We thank all patients, physicians, clinical trial nurses, laboratory staff, and technicians for their participation in this&#x20;study.</p>
</ack>
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